PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000875.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 232aa    MW: 26074.8 Da    PI: 6.5978
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000875.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.38.3e-5738133297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +eqdrflPianv+rimkk++Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa++tlGfedyv+plk+yl
  Itr_sc000875.1_g00004.1  38 KEQDRFLPIANVGRIMKKAVPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEDYVNPLKLYL 123
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              +kyrelegek
  Itr_sc000875.1_g00004.1 124 NKYRELEGEK 133
                              ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-5432149IPR009072Histone-fold
SuperFamilySSF471136.68E-4140148IPR009072Histone-fold
PfamPF008083.5E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.6E-207189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.6E-2090108No hitNo description
PRINTSPR006156.6E-20109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEDDERHGNA PNVGLRASPE SSTCSKNNSI NNNNNNNKEQ DRFLPIANVG RIMKKAVPAN  60
GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING DDILWAITTL GFEDYVNPLK  120
LYLNKYRELE GEKQLNVPKQ QQQQQQQQPQ QNVVVDHQNP LNLGAVYNPC GSNVYTSSNN  180
SPAGLLSHHP SYVSSSDHHL QPFLNLPFPT HQNAIQAQFT QQEHIDSVGH WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4638128292Transcription factor HapC (Eurofung)
4g92_B4e-4638128292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955851.13e-79PREDICTED: nuclear transcription factor Y subunit B-7
RefseqXP_016189718.13e-79PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotO233106e-64NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
SwissprotQ9SIT92e-63NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLM1BE772e-78M1BE77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000431766e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.17e-64nuclear factor Y, subunit B7